Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04488524_3804 | Not Available | Negative | 4494588 - 4495067 | 18484.8 |
| succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase | SAMN04488524_3805 | Not Available | Negative | 4495189 - 4496562 | 49313.9 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488524_3806 | Not Available | Negative | 4496581 - 4497180 | 23002.9 |
| fecr family protein | SAMN04488524_3807 | Not Available | Positive | 4497427 - 4498623 | 43520.7 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488524_3808 | Not Available | Positive | 4498801 - 4502184 | 125758.0 |
| susd family protein | SAMN04488524_3809 | Not Available | Positive | 4502186 - 4503622 | 53526.8 |
| protein of unknown function | SAMN04488524_3810 | Not Available | Positive | 4503634 - 4504362 | 27040.8 |
| pkd-like family protein | SAMN04488524_3811 | Not Available | Positive | 4504374 - 4505855 | 54333.5 |
| peroxiredoxin | SAMN04488524_3812 | Not Available | Positive | 4505868 - 4506893 | 37553.1 |
| polyketide cyclase / dehydrase and lipid transport | SAMN04488524_3813 | Not Available | Negative | 4506925 - 4507464 | 20476.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

