Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-dehydro-3-deoxyphosphooctonate aldolase (kdo 8-p synthase) | SAMN04488524_3784 | Not Available | Positive | 4479006 - 4479821 | 29234.6 |
| outer membrane protein ompa and related peptidoglycan-associated (lipo)proteins | SAMN04488524_3785 | Not Available | Negative | 4479828 - 4481723 | 70708.6 |
| organic radical activating enzyme | SAMN04488524_3786 | Not Available | Negative | 4481776 - 4482399 | 23275.9 |
| 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin subunit | SAMN04488524_3787 | Not Available | Positive | 4482477 - 4482818 | 13064.6 |
| 5,10-methylenetetrahydrofolate dehydrogenase (nadp+) | SAMN04488524_3788 | Not Available | Negative | 4482824 - 4483705 | 31767.7 |
| gtp-binding protein lepa | SAMN04488524_3789 | Not Available | Negative | 4483765 - 4485552 | 66586.9 |
| copper homeostasis protein | SAMN04488524_3790 | Not Available | Negative | 4485610 - 4486350 | 26243.8 |
| asparaginase | SAMN04488524_3791 | Not Available | Negative | 4486370 - 4487401 | 37059.8 |
| carbon-nitrogen hydrolase | SAMN04488524_3792 | Not Available | Negative | 4487410 - 4488204 | 30604.6 |
| methionine aminotransferase | SAMN04488524_3793 | Not Available | Negative | 4488229 - 4489374 | 42895.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

