Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| homoserine o-acetyltransferase | SAMN04488524_3653 | Not Available | Negative | 4317144 - 4318202 | 39036.2 |
| o-acetylhomoserine sulfhydrylase | SAMN04488524_3654 | Not Available | Negative | 4318228 - 4319532 | 46866.3 |
| cystathionine gamma-synthase | SAMN04488524_3655 | Not Available | Negative | 4320031 - 4321146 | 40031.2 |
| lipocalin-like domain-containing protein | SAMN04488524_3656 | Not Available | Positive | 4321263 - 4321757 | 17899.4 |
| uncharacterized conserved protein ydei, yjbr/cyay-like superfamily, duf1801 family | SAMN04488524_3657 | Not Available | Negative | 4321928 - 4322536 | 23027.6 |
| aminodeoxyfutalosine synthase | SAMN04488524_3658 | Not Available | Positive | 4322662 - 4323855 | 46492.4 |
| probable phosphoglycerate mutase | SAMN04488524_3659 | Not Available | Positive | 4323856 - 4324467 | 23242.5 |
| chorismate dehydratase | SAMN04488524_3660 | Not Available | Positive | 4324477 - 4325202 | 26913.3 |
| dna mismatch repair protein muts | SAMN04488524_3661 | Not Available | Positive | 4325322 - 4327898 | 96553.1 |
| probable lipoprotein nlpc | SAMN04488524_3662 | Not Available | Positive | 4327900 - 4328418 | 19074.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

