Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphoribosylaminoimidazole-succinocarboxamide synthase | SAMN04488524_3643 | Not Available | Positive | 4305350 - 4306294 | 35529.3 |
| anti-anti-sigma factor | SAMN04488524_3644 | Not Available | Positive | 4306363 - 4306749 | 14215.2 |
| ribonuclease z | SAMN04488524_3645 | Not Available | Positive | 4306749 - 4307663 | 34415.4 |
| phospholipid/cholesterol/gamma-hch transport system substrate-binding protein | SAMN04488524_3646 | Not Available | Negative | 4307707 - 4308660 | 34174.2 |
| n-acetylmuramoyl-l-alanine amidase | SAMN04488524_3647 | Not Available | Negative | 4308661 - 4309506 | 31640.9 |
| n-acetylmuramoyl-l-alanine amidase | SAMN04488524_3648 | Not Available | Negative | 4309548 - 4310426 | 32810.6 |
| lps assembly outer membrane protein lptd (organic solvent tolerance protein osta) | SAMN04488524_3649 | Not Available | Positive | 4310483 - 4313179 | 101683.0 |
| nicotinamide-nucleotide amidase | SAMN04488524_3650 | Not Available | Positive | 4313192 - 4314439 | 45370.3 |
| 2-oxoglutarate dehydrogenase e2 component (dihydrolipoamide succinyltransferase) | SAMN04488524_3651 | Not Available | Positive | 4314490 - 4315833 | 48362.4 |
| homoserine dehydrogenase | SAMN04488524_3652 | Not Available | Negative | 4315892 - 4317136 | 46851.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

