Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| membrane protein | SAMN04488524_3623 | Not Available | Negative | 4285162 - 4286151 | 37738.0 |
| upf0755 protein | SAMN04488524_3624 | Not Available | Negative | 4286172 - 4287218 | 40000.3 |
| pasta domain, binds beta-lactams | SAMN04488524_3625 | Not Available | Negative | 4287239 - 4288006 | 27714.6 |
| d-alanine-d-alanine ligase | SAMN04488524_3626 | Not Available | Positive | 4288158 - 4289144 | 36359.7 |
| protein of unknown function | SAMN04488524_3627 | Not Available | Negative | 4289211 - 4289987 | 28518.1 |
| camp-binding domain of crp or a regulatory subunit of camp-dependent protein kinases | SAMN04488524_3628 | Not Available | Positive | 4290112 - 4290693 | 22294.6 |
| hypothetical protein | SAMN04488524_3629 | Not Available | Positive | 4290761 - 4291147 | 14566.0 |
| putative efflux protein, mate family | SAMN04488524_3630 | Not Available | Negative | 4291137 - 4292564 | 51258.3 |
| thioesterase-3 | SAMN04488524_3631 | Not Available | Negative | 4292858 - 4293277 | 16116.6 |
| small subunit ribosomal protein s15 | SAMN04488524_3632 | Not Available | Positive | 4293428 - 4293706 | 10723.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

