Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| oxidoreductase family, nad-binding rossmann fold | SAMN04488524_3603 | Not Available | Positive | 4261469 - 4262881 | 53536.3 |
| n-acetylglucosamine 6-phosphate deacetylase | SAMN04488524_3604 | Not Available | Positive | 4262980 - 4264224 | 45372.1 |
| glucosamine-6-phosphate deaminase | SAMN04488524_3605 | Not Available | Positive | 4264230 - 4264988 | 28564.2 |
| transcriptional regulator, laci family | SAMN04488524_3606 | Not Available | Positive | 4265158 - 4266222 | 40436.6 |
| signal transduction histidine kinase | SAMN04488524_3607 | Not Available | Positive | 4266286 - 4267911 | 60541.3 |
| hypothetical protein | SAMN04488524_3608 | Not Available | Positive | 4268012 - 4270072 | 77104.3 |
| alpha-galactosidase | SAMN04488524_3609 | Not Available | Positive | 4270080 - 4272251 | 82982.5 |
| polygalacturonase | SAMN04488524_3610 | Not Available | Positive | 4272289 - 4273779 | 53997.1 |
| duf218 domain-containing protein | SAMN04488524_3611 | Not Available | Negative | 4273776 - 4274474 | 26517.0 |
| dna end-binding protein ku | SAMN04488524_3612 | Not Available | Positive | 4274615 - 4275379 | 29237.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

