Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04488524_3543 | Not Available | Negative | 4195240 - 4195749 | 19117.8 |
| protein of unknown function | SAMN04488524_3544 | Not Available | Negative | 4195774 - 4196574 | 27946.8 |
| hypothetical protein | SAMN04488524_3545 | Not Available | Positive | 4196772 - 4197011 | 9043.07 |
| hypothetical protein | SAMN04488524_3546 | Not Available | Positive | 4197022 - 4197864 | 31158.7 |
| dna-binding response regulator, ompr family, contains rec and winged-helix (whth) domain | SAMN04488524_3547 | Not Available | Positive | 4197876 - 4198550 | 25962.5 |
| signal transduction histidine kinase | SAMN04488524_3548 | Not Available | Positive | 4198554 - 4199870 | 50596.2 |
| thioredoxin | SAMN04488524_3549 | Not Available | Negative | 4199867 - 4201075 | 45897.1 |
| conserved hypothetical protein | SAMN04488524_3550 | Not Available | Positive | 4201203 - 4201649 | 16689.7 |
| two component transcriptional regulator, luxr family | SAMN04488524_3551 | Not Available | Positive | 4201701 - 4202351 | 23925.1 |
| rna polymerase, sigma subunit, ecf family | SAMN04488524_3552 | Not Available | Positive | 4202561 - 4203088 | 20562.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

