Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04488524_3523 | Not Available | Negative | 4173443 - 4173577 | 5348.56 |
| gntr family transcriptional regulator / mocr family aminotransferase | SAMN04488524_3524 | Not Available | Positive | 4173616 - 4175082 | 56099.2 |
| hypothetical protein | SAMN04488524_3525 | Not Available | Negative | 4175096 - 4175881 | 28899.2 |
| protein of unknown function | SAMN04488524_3526 | Not Available | Positive | 4176544 - 4176993 | 17060.6 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488524_3527 | Not Available | Positive | 4177149 - 4177733 | 22754.7 |
| fecr family protein | SAMN04488524_3528 | Not Available | Positive | 4177788 - 4178939 | 41921.8 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488524_3529 | Not Available | Positive | 4179140 - 4182637 | 130549.0 |
| starch-binding associating with outer membrane | SAMN04488524_3530 | Not Available | Positive | 4182649 - 4184457 | 67547.9 |
| calcineurin-like phosphoesterase | SAMN04488524_3531 | Not Available | Positive | 4184468 - 4185094 | 23707.4 |
| hypothetical protein | SAMN04488524_3532 | Not Available | Negative | 4185146 - 4185403 | 9321.83 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

