Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-linked outer membrane protein, susc/raga family | SAMN04488524_3503 | Not Available | Positive | 4142458 - 4145853 | 125642.0 |
| susd family protein | SAMN04488524_3504 | Not Available | Positive | 4145866 - 4147302 | 53668.2 |
| protein of unknown function | SAMN04488524_3505 | Not Available | Positive | 4147322 - 4148071 | 27988.7 |
| pkd-like family protein | SAMN04488524_3506 | Not Available | Positive | 4148096 - 4149604 | 57055.1 |
| peroxiredoxin | SAMN04488524_3507 | Not Available | Positive | 4149641 - 4150756 | 41321.9 |
| repeat domain-containing protein | SAMN04488524_3508 | Not Available | Positive | 4150925 - 4151965 | 37070.5 |
| hypothetical protein | SAMN04488524_3509 | Not Available | Negative | 4152022 - 4152825 | 30138.8 |
| hypothetical protein | SAMN04488524_3510 | Not Available | Negative | 4152836 - 4153627 | 29529.3 |
| outer membrane receptor proteins, mostly fe transport | SAMN04488524_3511 | Not Available | Negative | 4153655 - 4157098 | 130081.0 |
| fecr family protein | SAMN04488524_3512 | Not Available | Negative | 4157225 - 4158439 | 45411.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

