Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulator, laci family | SAMN04488524_3443 | Not Available | Negative | 4078333 - 4079355 | 38415.6 |
| predicted dehydrogenase | SAMN04488524_3444 | Not Available | Positive | 4079702 - 4081054 | 50159.0 |
| hypothetical protein | SAMN04488524_3445 | Not Available | Negative | 4081138 - 4081338 | 7474.21 |
| helix-turn-helix domain-containing protein | SAMN04488524_3446 | Not Available | Positive | 4081607 - 4081936 | 12509.1 |
| 2-dehydro-3-deoxyphosphogluconate aldolase / (4s)-4-hydroxy-2-oxoglutarate aldolase | SAMN04488524_3447 | Not Available | Negative | 4081966 - 4082619 | 23891.0 |
| 2-dehydro-3-deoxygluconokinase | SAMN04488524_3448 | Not Available | Negative | 4082664 - 4083698 | 37864.2 |
| nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase family | SAMN04488524_3449 | Not Available | Positive | 4083831 - 4084652 | 28946.6 |
| mannonate dehydratase | SAMN04488524_3450 | Not Available | Positive | 4084678 - 4085853 | 44011.6 |
| transcriptional regulator, laci family | SAMN04488524_3451 | Not Available | Negative | 4085861 - 4086904 | 38544.4 |
| transcriptional regulator, tetr family | SAMN04488524_3452 | Not Available | Positive | 4087116 - 4087715 | 23409.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

