Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna pseudouridine65 synthase | SAMN04488524_3383 | Not Available | Positive | 4003094 - 4003771 | 26072.6 |
| chromosomal replication initiator protein | SAMN04488524_3384 | Not Available | Positive | 4003968 - 4005398 | 53978.3 |
| Trna-glu | Not Available | Not Available | Positive | 4005533 - 4005604 | Not Available |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488524_3386 | Not Available | Positive | 4006002 - 4009175 | 116500.0 |
| susd family protein | SAMN04488524_3387 | Not Available | Positive | 4009193 - 4010653 | 53603.0 |
| Trna-thr | Not Available | Not Available | Positive | 4010712 - 4010787 | Not Available |
| dna-binding transcriptional regulator, marr family | SAMN04488524_3389 | Not Available | Negative | 4011036 - 4011500 | 17978.2 |
| n-acetylglutamate synthase, gnat family | SAMN04488524_3390 | Not Available | Negative | 4011497 - 4011988 | 18902.0 |
| peptidase family m23 | SAMN04488524_3391 | Not Available | Negative | 4012063 - 4012692 | 24535.8 |
| malate dehydrogenase (quinone) | SAMN04488524_3392 | Not Available | Positive | 4012933 - 4014426 | 54913.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

