Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| l,d-transpeptidase catalytic domain | SAMN04488524_3373 | Not Available | Negative | 3992557 - 3993309 | 27438.6 |
| hypothetical protein | SAMN04488524_3374 | Not Available | Negative | 3993485 - 3993844 | 13502.5 |
| hypothetical protein | SAMN04488524_3375 | Not Available | Negative | 3994034 - 3995077 | 41222.5 |
| luciferase family oxidoreductase, group 1 | SAMN04488524_3376 | Not Available | Positive | 3995227 - 3996234 | 36807.0 |
| undecaprenyl-diphosphatase | SAMN04488524_3377 | Not Available | Positive | 3996319 - 3996921 | 22023.8 |
| dgtpase | SAMN04488524_3378 | Not Available | Positive | 3997178 - 3998521 | 50492.5 |
| dipeptidase d | SAMN04488524_3379 | Not Available | Positive | 3998615 - 4000069 | 52189.9 |
| serine o-acetyltransferase | SAMN04488524_3380 | Not Available | Positive | 4000125 - 4000937 | 30090.3 |
| cysteine synthase b | SAMN04488524_3381 | Not Available | Positive | 4000941 - 4001813 | 31870.4 |
| septal ring factor envc, activator of murein hydrolases amia and amib | SAMN04488524_3382 | Not Available | Positive | 4001841 - 4003094 | 47801.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

