Pedobacter africanus strain DSM 12126

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter africanus strain DSM 12126 is a bacterium characterized by the presence of flagella, which suggests it has the capability for motility. This trait may facilitate its movement in various environments, potentially aiding in colonization and interaction with other microorganisms. The strain is noted to possess a single replicon, which indicates a streamlined genetic organization. This can be an advantage for efficient replication and stability of genetic material, allowing for rapid adaptation to environmental changes. Pedobacter africanus is documented under the accession FWXT00000000.1, providing a reference for genomic studies and comparative analyses with other strains or species within the genus Pedobacter. The ecological role of Pedobacter africanus, like other members of the genus, is likely linked to its involvement in the degradation of organic matter and nutrient cycling in soil and aquatic environments. The presence of flagella may enhance its ecological interactions, facilitating its ability to thrive in diverse habitats. Overall, the traits of Pedobacter africanus strain DSM 12126 underscore its potential significance in microbiological studies and ecological research, particularly in understanding microbial dynamics in various ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter africanus
Strainstrain DSM 12126

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter africanus strain DSM 12126 genome assembly, contig:

Gene Summary

Adenine Count

1609729 bp

Thymine Count

1628936 bp

Guanine Count

1235949 bp

Cytosine Count

1248253 bp

Genome Length

5722867 bp

Protein-coding Genes

4691 genes

Non-Coding Genes

66 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
exodeoxyribonuclease-3SAMN04488524_3363Not AvailablePositive3982482 - 398331231866.5
putative binding domain-containing protein, n-terminalSAMN04488524_3364Not AvailablePositive3983322 - 398535873551.3
cold-shock dna-binding protein familySAMN04488524_3365Not AvailableNegative3985613 - 39858046996.4
nad(p)h-dependent fmn reductaseSAMN04488524_3366Not AvailablePositive3985919 - 398647620806.1
uncharacterized damage-inducible protein dinb (forms a four-helix bundle)SAMN04488524_3367Not AvailablePositive3986548 - 398705718993.4
hypothetical proteinSAMN04488524_3368Not AvailablePositive3987181 - 398791227152.3
outer membrane receptor for ferrienterochelin and colicinsSAMN04488524_3369Not AvailablePositive3988083 - 399040786674.1
protein of unknown functionSAMN04488524_3370Not AvailablePositive3990413 - 399122529446.6
hypothetical proteinSAMN04488524_3371Not AvailablePositive3991315 - 39915549148.08
thioredoxin reductaseSAMN04488524_3372Not AvailablePositive3991656 - 399255232154.7

Displaying genes 3321 – 3330 of 4757 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.