Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| methyltransferase domain-containing protein | SAMN04488524_0298 | Not Available | Positive | 426595 - 427779 | 44032.1 |
| protein of unknown function | SAMN04488524_0299 | Not Available | Positive | 427884 - 430886 | 112878.0 |
| alkyl hydroperoxide reductase subunit ahpc (peroxiredoxin) | SAMN04488524_0300 | Not Available | Negative | 430929 - 431564 | 23640.0 |
| uncharacterized conserved protein yece, duf72 family | SAMN04488524_0301 | Not Available | Negative | 431638 - 432582 | 36327.5 |
| trypsin-like peptidase domain-containing protein | SAMN04488524_0302 | Not Available | Negative | 432657 - 433751 | 40115.9 |
| rna polymerase sigma factor, sigma-70 family | SAMN04488524_0303 | Not Available | Negative | 433758 - 434324 | 21778.9 |
| uncharacterized conserved protein ydei, yjbr/cyay-like superfamily, duf1801 family | SAMN04488524_0304 | Not Available | Positive | 434461 - 435045 | 22770.7 |
| camp-binding domain of crp or a regulatory subunit of camp-dependent protein kinases | SAMN04488524_0305 | Not Available | Positive | 435067 - 435642 | 22615.2 |
| alkylhydroperoxidase ahpd family core domain-containing protein | SAMN04488524_0306 | Not Available | Positive | 435718 - 436164 | 16867.5 |
| methyltransferase domain-containing protein | SAMN04488524_0307 | Not Available | Positive | 436315 - 437121 | 30147.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

