Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carboxypeptidase regulatory-like domain-containing protein | SAMN04488524_3301 | Not Available | Negative | 3917551 - 3918291 | 26778.1 |
| tetratricopeptide repeat-containing protein | SAMN04488524_3302 | Not Available | Positive | 3918501 - 3920666 | 80519.0 |
| ycei-like domain-containing protein | SAMN04488524_3303 | Not Available | Positive | 3920749 - 3921345 | 21633.2 |
| hypothetical protein | SAMN04488524_3304 | Not Available | Positive | 3921389 - 3921865 | 18327.0 |
| cytochrome c | SAMN04488524_3306 | Not Available | Positive | 3923469 - 3924443 | 35329.7 |
| two component transcriptional regulator, lyttr family | SAMN04488524_3307 | Not Available | Negative | 3924534 - 3925253 | 27765.3 |
| histidine kinase | SAMN04488524_3308 | Not Available | Negative | 3925250 - 3926386 | 43910.2 |
| outer membrane protein ompa | SAMN04488524_3309 | Not Available | Positive | 3926699 - 3927976 | 46823.8 |
| pyruvate, water dikinase | SAMN04488524_3310 | Not Available | Negative | 3928027 - 3930657 | 97129.5 |
| dna-binding transcriptional regulator, marr family | SAMN04488524_3311 | Not Available | Negative | 3930664 - 3931119 | 17176.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

