Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488524_3290 | Not Available | Positive | 3905249 - 3905827 | 22642.5 |
| fecr family protein | SAMN04488524_3291 | Not Available | Positive | 3905962 - 3907074 | 41466.3 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488524_3292 | Not Available | Positive | 3907317 - 3910961 | 134888.0 |
| susd family protein | SAMN04488524_3293 | Not Available | Positive | 3910974 - 3912380 | 52165.5 |
| thiol-disulfide isomerase or thioredoxin | SAMN04488524_3294 | Not Available | Positive | 3912388 - 3913512 | 41647.6 |
| acyl dehydratase | SAMN04488524_3295 | Not Available | Negative | 3913646 - 3914104 | 17607.3 |
| bacteriocin-type signal sequence-containing protein | SAMN04488524_3297 | Not Available | Positive | 3914540 - 3914701 | 6065.12 |
| transcriptional regulator, hxlr family | SAMN04488524_3298 | Not Available | Negative | 3914755 - 3915147 | 14914.5 |
| ribd c-terminal domain-containing protein | SAMN04488524_3299 | Not Available | Positive | 3915232 - 3915762 | 19243.3 |
| hypothetical protein | SAMN04488524_3300 | Not Available | Negative | 3915804 - 3916922 | 41428.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

