Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04488524_3164 | Not Available | Positive | 3762441 - 3762602 | 6311.83 |
| mn-containing catalase | SAMN04488524_3165 | Not Available | Negative | 3762619 - 3763560 | 35057.1 |
| dtdp-4-dehydrorhamnose reductase | SAMN04488524_3166 | Not Available | Negative | 3763905 - 3766004 | 78905.5 |
| udp-galactopyranose mutase | SAMN04488524_3167 | Not Available | Negative | 3765982 - 3767127 | 44099.3 |
| glycosyltransferase involved in cell wall bisynthesis | SAMN04488524_3168 | Not Available | Negative | 3767129 - 3768271 | 43614.2 |
| putative membrane protein | SAMN04488524_3170 | Not Available | Positive | 3768727 - 3769383 | 23893.7 |
| pas domain s-box-containing protein | SAMN04488524_3171 | Not Available | Positive | 3769432 - 3771084 | 64369.4 |
| protein imua | SAMN04488524_3173 | Not Available | Positive | 3771519 - 3772286 | 28034.7 |
| protein imub | SAMN04488524_3174 | Not Available | Positive | 3772292 - 3773800 | 56784.4 |
| error-prone dna polymerase, dnae-like | SAMN04488524_3175 | Not Available | Positive | 3773811 - 3777050 | 121816.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

