Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bifunctional non-homologous end joining protein ligd | SAMN04488524_3133 | Not Available | Positive | 3739614 - 3742598 | 112520.0 |
| helicase conserved c-terminal domain-containing protein | SAMN04488524_3134 | Not Available | Positive | 3742674 - 3744173 | 57045.1 |
| hypothetical protein | SAMN04488524_3135 | Not Available | Positive | 3744192 - 3744413 | 8273.69 |
| conserved hypothetical protein | SAMN04488524_3136 | Not Available | Positive | 3744450 - 3744905 | 16975.9 |
| uncharacterized protein yjlb | SAMN04488524_3137 | Not Available | Positive | 3744985 - 3745521 | 19880.3 |
| alkylated dna repair dioxygenase alkb | SAMN04488524_3138 | Not Available | Negative | 3745537 - 3746163 | 24429.3 |
| rhomboid protease glup | SAMN04488524_3139 | Not Available | Positive | 3746302 - 3747762 | 54560.7 |
| secondary thiamine-phosphate synthase enzyme | SAMN04488524_3140 | Not Available | Positive | 3747799 - 3748227 | 15940.0 |
| hypothetical protein | SAMN04488524_3141 | Not Available | Positive | 3748287 - 3749120 | 31942.8 |
| hypothetical protein | SAMN04488524_3142 | Not Available | Positive | 3749389 - 3749751 | 14044.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

