Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488524_3090 | Not Available | Positive | 3689038 - 3689610 | 22462.2 |
| fecr family protein | SAMN04488524_3091 | Not Available | Positive | 3689749 - 3690903 | 43039.7 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488524_3092 | Not Available | Positive | 3691097 - 3694459 | 125485.0 |
| starch-binding associating with outer membrane | SAMN04488524_3093 | Not Available | Positive | 3694472 - 3696205 | 65977.8 |
| hypothetical protein | SAMN04488524_3094 | Not Available | Positive | 3696245 - 3698479 | 80901.5 |
| inosine-uridine preferring nucleoside hydrolase | SAMN04488524_3095 | Not Available | Positive | 3698490 - 3701642 | 118705.0 |
| glycosyl hydrolases family 2, sugar binding domain | SAMN04488524_3096 | Not Available | Positive | 3701670 - 3704912 | 120282.0 |
| ribokinase | SAMN04488524_3097 | Not Available | Positive | 3704979 - 3705878 | 31001.3 |
| glucose uptake protein | SAMN04488524_3098 | Not Available | Positive | 3705902 - 3706906 | 35591.3 |
| hypothetical protein | SAMN04488524_3099 | Not Available | Positive | 3707309 - 3707533 | 8715.69 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

