Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04488524_3060 | Not Available | Positive | 3656054 - 3656776 | 27095.0 |
| protein of unknown function | SAMN04488524_3061 | Not Available | Negative | 3656849 - 3657952 | 39749.2 |
| tpr repeat-containing protein | SAMN04488524_3062 | Not Available | Positive | 3658417 - 3662145 | 141940.0 |
| major paralogous domain-containing protein | SAMN04488524_3063 | Not Available | Positive | 3662286 - 3663482 | 43633.5 |
| hypothetical protein | SAMN04488524_3064 | Not Available | Negative | 3663486 - 3664742 | 48252.2 |
| polyhydroxybutyrate depolymerase | SAMN04488524_3065 | Not Available | Positive | 3664827 - 3665642 | 29709.0 |
| lipocalin-like domain-containing protein | SAMN04488524_3066 | Not Available | Negative | 3665660 - 3666031 | 13600.1 |
| heparin/heparan-sulfate lyase | SAMN04488524_3067 | Not Available | Positive | 3666270 - 3668576 | 87280.5 |
| cold-shock dna-binding protein family | SAMN04488524_3068 | Not Available | Negative | 3668661 - 3668852 | 6904.13 |
| uncharacterized membrane protein yhah, duf805 family | SAMN04488524_3069 | Not Available | Positive | 3669154 - 3669600 | 16764.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

