Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 8-oxo-dgtp diphosphatase | SAMN04488524_3030 | Not Available | Positive | 3625663 - 3626064 | 14814.9 |
| uncharacterized protein | SAMN04488524_3031 | Not Available | Negative | 3626067 - 3627656 | 59063.1 |
| hypothetical protein | SAMN04488524_3032 | Not Available | Negative | 3627726 - 3628286 | 19738.8 |
| signal transduction histidine kinase | SAMN04488524_3033 | Not Available | Positive | 3628422 - 3630392 | 75604.3 |
| hypothetical protein | SAMN04488524_3034 | Not Available | Negative | 3630425 - 3630856 | 15331.5 |
| two component transcriptional regulator, luxr family | SAMN04488524_3035 | Not Available | Positive | 3630984 - 3631625 | 23546.2 |
| stress responsive a/b barrel domain | SAMN04488524_3036 | Not Available | Positive | 3631668 - 3631967 | 11391.7 |
| protein of unknown function | SAMN04488524_3037 | Not Available | Positive | 3631974 - 3632369 | 15225.7 |
| acetyltransferase (gnat) family protein | SAMN04488524_3038 | Not Available | Positive | 3632371 - 3632925 | 19958.9 |
| arac-type dna-binding protein | SAMN04488524_3039 | Not Available | Negative | 3632922 - 3633848 | 35911.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

