Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyl transferase family, helical bundle domain | SAMN04488524_3010 | Not Available | Positive | 3604095 - 3604883 | 30036.7 |
| nucleotide-binding universal stress protein, uspa family | SAMN04488524_3011 | Not Available | Positive | 3604993 - 3605814 | 30206.8 |
| prolyl oligopeptidase | SAMN04488524_3012 | Not Available | Positive | 3605824 - 3607962 | 78563.2 |
| ahpc/tsa family protein | SAMN04488524_3013 | Not Available | Negative | 3607977 - 3608471 | 18928.0 |
| signal transduction histidine kinase | SAMN04488524_3014 | Not Available | Negative | 3608516 - 3609835 | 50338.4 |
| dna-binding response regulator, ompr family, contains rec and winged-helix (whth) domain | SAMN04488524_3015 | Not Available | Negative | 3609836 - 3610510 | 26109.7 |
| hypothetical protein | SAMN04488524_3016 | Not Available | Negative | 3610510 - 3610782 | 10317.3 |
| hypothetical protein | SAMN04488524_3017 | Not Available | Positive | 3611021 - 3611488 | 18454.6 |
| protein of unknown function | SAMN04488524_3018 | Not Available | Negative | 3611564 - 3612262 | 24519.2 |
| ribose 5-phosphate isomerase b | SAMN04488524_3019 | Not Available | Positive | 3612424 - 3612873 | 16156.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

