Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hydroxymethylpyrimidine synthase | SAMN04488524_3000 | Not Available | Negative | 3590072 - 3591955 | 70270.8 |
| sulfur carrier protein this | SAMN04488524_3001 | Not Available | Negative | 3591978 - 3592181 | 7274.78 |
| sugar phosphate permease | SAMN04488524_3002 | Not Available | Positive | 3592485 - 3593636 | 42163.9 |
| gas vesicle protein | SAMN04488524_3003 | Not Available | Negative | 3593676 - 3594062 | 13933.4 |
| mfs transporter, dha1 family, arabinose polymer transporter | SAMN04488524_3004 | Not Available | Positive | 3594312 - 3595472 | 40611.3 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488524_3005 | Not Available | Positive | 3595604 - 3596185 | 22419.3 |
| fecr family protein | SAMN04488524_3006 | Not Available | Positive | 3596263 - 3597315 | 39815.3 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488524_3007 | Not Available | Positive | 3597440 - 3600895 | 126095.0 |
| starch-binding associating with outer membrane | SAMN04488524_3008 | Not Available | Positive | 3600915 - 3602594 | 63668.4 |
| cubico group peptidase, beta-lactamase class c family | SAMN04488524_3009 | Not Available | Positive | 3602684 - 3604018 | 48811.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

