Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gluconate 2-dehydrogenase subunit 3 | SAMN04488524_2990 | Not Available | Positive | 3581247 - 3581831 | 21197.4 |
| choline dehydrogenase | SAMN04488524_2991 | Not Available | Positive | 3581858 - 3583558 | 64348.4 |
| hypothetical protein | SAMN04488524_2992 | Not Available | Negative | 3583890 - 3584738 | 31996.3 |
| hypothetical protein | SAMN04488524_2993 | Not Available | Negative | 3584668 - 3585054 | 15315.6 |
| adenylyltransferase and sulfurtransferase | SAMN04488524_2994 | Not Available | Negative | 3585176 - 3586237 | 38941.1 |
| tyrosine lyase thih | SAMN04488524_2995 | Not Available | Negative | 3586210 - 3587319 | 42391.7 |
| thiazole-phosphate synthase | SAMN04488524_2996 | Not Available | Negative | 3587326 - 3588093 | 27140.2 |
| thiamine-phosphate diphosphorylase | SAMN04488524_2997 | Not Available | Negative | 3588097 - 3588738 | 23058.2 |
| hydroxymethylpyrimidine/phosphomethylpyrimidine kinase | SAMN04488524_2998 | Not Available | Negative | 3588735 - 3589490 | 27595.6 |
| thiamine-phosphate pyrophosphorylase | SAMN04488524_2999 | Not Available | Negative | 3589478 - 3590068 | 22092.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

