Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cu+-exporting atpase | SAMN04488524_2980 | Not Available | Negative | 3562194 - 3564596 | 89105.8 |
| hypothetical protein | SAMN04488524_2981 | Not Available | Positive | 3564818 - 3565999 | 45222.1 |
| polyphosphate kinase | SAMN04488524_2982 | Not Available | Positive | 3566007 - 3567971 | 75085.1 |
| sdia-regulated | SAMN04488524_2983 | Not Available | Positive | 3567984 - 3568868 | 33102.5 |
| hypothetical protein | SAMN04488524_2984 | Not Available | Positive | 3568950 - 3571307 | 90929.2 |
| hypothetical protein | SAMN04488524_2985 | Not Available | Positive | 3571337 - 3573928 | 98679.8 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488524_2986 | Not Available | Positive | 3574090 - 3574668 | 22493.4 |
| fecr family protein | SAMN04488524_2987 | Not Available | Positive | 3574728 - 3575639 | 33408.2 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488524_2988 | Not Available | Positive | 3575842 - 3579228 | 125640.0 |
| starch-binding associating with outer membrane | SAMN04488524_2989 | Not Available | Positive | 3579233 - 3581101 | 70486.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

