Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| d-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain | SAMN04488524_2970 | Not Available | Positive | 3554097 - 3554573 | 17244.6 |
| oxygen-independent coproporphyrinogen-3 oxidase | SAMN04488524_2971 | Not Available | Positive | 3554563 - 3555927 | 51732.8 |
| hemoglobin | SAMN04488524_2972 | Not Available | Negative | 3555935 - 3556321 | 14688.8 |
| hypothetical protein | SAMN04488524_2973 | Not Available | Negative | 3556325 - 3557005 | 24743.3 |
| hypothetical protein | SAMN04488524_2974 | Not Available | Negative | 3557002 - 3557427 | 16198.6 |
| cytochrome c oxidase accessory protein fixg | SAMN04488524_2975 | Not Available | Negative | 3557431 - 3558828 | 53112.7 |
| cytochrome c oxidase cbb3-type subunit 3 | SAMN04488524_2976 | Not Available | Negative | 3558831 - 3559643 | 30072.4 |
| hypothetical protein | SAMN04488524_2977 | Not Available | Negative | 3559640 - 3559807 | 6370.03 |
| cytochrome c oxidase cbb3-type subunit i/ii | SAMN04488524_2978 | Not Available | Negative | 3559827 - 3561938 | 80218.9 |
| cytochrome oxidase maturation protein, cbb3-type | SAMN04488524_2979 | Not Available | Negative | 3562012 - 3562197 | 6956.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

