Pedobacter africanus strain DSM 12126

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter africanus strain DSM 12126 is a bacterium characterized by the presence of flagella, which suggests it has the capability for motility. This trait may facilitate its movement in various environments, potentially aiding in colonization and interaction with other microorganisms. The strain is noted to possess a single replicon, which indicates a streamlined genetic organization. This can be an advantage for efficient replication and stability of genetic material, allowing for rapid adaptation to environmental changes. Pedobacter africanus is documented under the accession FWXT00000000.1, providing a reference for genomic studies and comparative analyses with other strains or species within the genus Pedobacter. The ecological role of Pedobacter africanus, like other members of the genus, is likely linked to its involvement in the degradation of organic matter and nutrient cycling in soil and aquatic environments. The presence of flagella may enhance its ecological interactions, facilitating its ability to thrive in diverse habitats. Overall, the traits of Pedobacter africanus strain DSM 12126 underscore its potential significance in microbiological studies and ecological research, particularly in understanding microbial dynamics in various ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter africanus
Strainstrain DSM 12126

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter africanus strain DSM 12126 genome assembly, contig:

Gene Summary

Adenine Count

1609729 bp

Thymine Count

1628936 bp

Guanine Count

1235949 bp

Cytosine Count

1248253 bp

Genome Length

5722867 bp

Protein-coding Genes

4691 genes

Non-Coding Genes

66 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinSAMN04488524_2950Not AvailablePositive3528337 - 352927835470.3
dna-binding transcriptional response regulator, ntrc family, contains rec, aaa-type atpase, and a fis-type dna-binding domainsSAMN04488524_2951Not AvailablePositive3529299 - 353064550110.1
general stress protein 26SAMN04488524_2952Not AvailablePositive3530732 - 353126819899.5
k+-transporting atpase atpase a chainSAMN04488524_2953Not AvailablePositive3531616 - 353333762494.3
k+-transporting atpase atpase b chainSAMN04488524_2954Not AvailablePositive3533347 - 353537772122.3
k+-transporting atpase atpase c chainSAMN04488524_2955Not AvailablePositive3535390 - 353595619890.4
putative beta-barrel porin-2, ompl-like. bbp2SAMN04488524_2956Not AvailablePositive3535965 - 353703539030.0
two-component system, ompr family, sensor histidine kinase kdpdSAMN04488524_2957Not AvailablePositive3537160 - 353829042897.5
pas/pac sensor signal transduction histidine kinaseSAMN04488524_2958Not AvailablePositive3538326 - 354008065812.5
methionine synthase (b12-independent)SAMN04488524_2959Not AvailablePositive3540514 - 354283287825.3

Displaying genes 2921 – 2930 of 4757 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.