Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-linked outer membrane protein, susc/raga family | SAMN04488524_2939 | Not Available | Positive | 3511826 - 3515215 | 124941.0 |
| starch-binding associating with outer membrane | SAMN04488524_2940 | Not Available | Positive | 3515224 - 3517065 | 68473.3 |
| protein of unknown function | SAMN04488524_2941 | Not Available | Positive | 3517085 - 3518044 | 35245.1 |
| protein of unknown function | SAMN04488524_2942 | Not Available | Positive | 3518055 - 3519377 | 47703.1 |
| dna-binding transcriptional response regulator, ntrc family, contains rec, aaa-type atpase, and a fis-type dna-binding domains | SAMN04488524_2943 | Not Available | Negative | 3519425 - 3520831 | 52275.7 |
| outer membrane receptor proteins, mostly fe transport | SAMN04488524_2945 | Not Available | Positive | 3521954 - 3524317 | 87684.3 |
| protein of unknown function | SAMN04488524_2946 | Not Available | Positive | 3524319 - 3525542 | 43606.5 |
| uncharacterized iron-regulated membrane protein | SAMN04488524_2947 | Not Available | Positive | 3525700 - 3527007 | 49195.0 |
| cytochrome c oxidase, cbb3-type, subunit iii | SAMN04488524_2948 | Not Available | Negative | 3527050 - 3527472 | 15642.0 |
| protein sco1/2 | SAMN04488524_2949 | Not Available | Negative | 3527476 - 3528150 | 25891.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

