Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| iron complex outermembrane recepter protein | SAMN04488524_2929 | Not Available | Positive | 3500180 - 3502090 | 71330.8 |
| l-histidine carboxy-lyase (histamine-forming) | SAMN04488524_2930 | Not Available | Negative | 3502062 - 3503204 | 42815.5 |
| hypothetical protein | SAMN04488524_2931 | Not Available | Positive | 3503438 - 3503686 | 9249.11 |
| aspartyl/glutamyl-trna(asn/gln) amidotransferase subunit b | SAMN04488524_2932 | Not Available | Positive | 3503769 - 3505232 | 54195.0 |
| peroxiredoxin | SAMN04488524_2933 | Not Available | Positive | 3505238 - 3506347 | 41242.3 |
| two-component system, ompr family, alkaline phosphatase synthesis response regulator phop | SAMN04488524_2934 | Not Available | Positive | 3506453 - 3507142 | 26006.7 |
| 23s rrna pseudouridine955/2504/2580 synthase | SAMN04488524_2935 | Not Available | Positive | 3507173 - 3507895 | 27478.1 |
| chloride channel protein, cic family | SAMN04488524_2936 | Not Available | Positive | 3507907 - 3509691 | 65515.2 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488524_2937 | Not Available | Positive | 3509847 - 3510410 | 21863.6 |
| fecr family protein | SAMN04488524_2938 | Not Available | Positive | 3510492 - 3511655 | 42921.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

