Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| adenosylmethionine-8-amino-7-oxononanoate aminotransferase | SAMN04488524_2909 | Not Available | Positive | 3473473 - 3474738 | 47202.1 |
| hypothetical protein | SAMN04488524_2910 | Not Available | Positive | 3474740 - 3475351 | 23326.1 |
| putative phosphoesterase | SAMN04488524_2911 | Not Available | Negative | 3475341 - 3475976 | 24012.1 |
| atp-dependent helicase lhr and lhr-like helicase | SAMN04488524_2912 | Not Available | Negative | 3475966 - 3478446 | 94010.0 |
| dna ligase-1 | SAMN04488524_2913 | Not Available | Negative | 3478471 - 3480078 | 61128.4 |
| putative mrna 3-end processing factor | SAMN04488524_2914 | Not Available | Negative | 3480075 - 3481076 | 36904.1 |
| protein of unknown function duf2625 | SAMN04488524_2915 | Not Available | Negative | 3481126 - 3481893 | 28983.7 |
| outer membrane receptor proteins, mostly fe transport | SAMN04488524_2916 | Not Available | Positive | 3481989 - 3484319 | 87272.6 |
| protein of unknown function | SAMN04488524_2917 | Not Available | Positive | 3484323 - 3485135 | 30019.8 |
| galactose mutarotase | SAMN04488524_2918 | Not Available | Negative | 3485302 - 3486168 | 32979.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

