Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cob(i)alamin adenosyltransferase | SAMN04488524_2899 | Not Available | Positive | 3465251 - 3465799 | 20848.3 |
| protein of unknown function | SAMN04488524_2900 | Not Available | Positive | 3465929 - 3466150 | 8587.66 |
| hypothetical protein | SAMN04488524_2901 | Not Available | Positive | 3466307 - 3466468 | 5703.53 |
| 2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase | SAMN04488524_2902 | Not Available | Negative | 3466517 - 3467191 | 25282.4 |
| s-adenosylmethionine--trna ribosyltransferase-isomerase | SAMN04488524_2903 | Not Available | Negative | 3467200 - 3468249 | 40020.1 |
| hypothetical protein | SAMN04488524_2904 | Not Available | Positive | 3468456 - 3469160 | 24949.2 |
| putative abc transport system permease protein | SAMN04488524_2905 | Not Available | Positive | 3469254 - 3470495 | 45705.8 |
| aspartate aminotransferase | SAMN04488524_2906 | Not Available | Negative | 3470731 - 3471924 | 43774.2 |
| cation diffusion facilitator family transporter | SAMN04488524_2907 | Not Available | Positive | 3472038 - 3473039 | 37404.5 |
| adp-ribose pyrophosphatase yjhb, nudix family | SAMN04488524_2908 | Not Available | Positive | 3473036 - 3473476 | 16990.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

