Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ctp synthase | SAMN04488524_2889 | Not Available | Negative | 3454534 - 3456150 | 59982.1 |
| glpgli family protein | SAMN04488524_2890 | Not Available | Negative | 3456307 - 3457065 | 29461.6 |
| carboxypepd_reg-like domain-containing protein | SAMN04488524_2891 | Not Available | Negative | 3457067 - 3459844 | 103089.0 |
| hypothetical protein | SAMN04488524_2892 | Not Available | Negative | 3460351 - 3460884 | 20376.2 |
| 3-deoxy-manno-octulosonate cytidylyltransferase (cmp-kdo synthetase) | SAMN04488524_2893 | Not Available | Negative | 3460881 - 3461615 | 27804.5 |
| deoxyadenosine/deoxycytidine kinase | SAMN04488524_2894 | Not Available | Negative | 3461617 - 3462231 | 23872.4 |
| tryptophanyl-trna synthetase | SAMN04488524_2895 | Not Available | Negative | 3462277 - 3463275 | 37714.9 |
| 1-acyl-sn-glycerol-3-phosphate acyltransferase | SAMN04488524_2896 | Not Available | Positive | 3463364 - 3464107 | 28870.3 |
| aspartyl/glutamyl-trna(asn/gln) amidotransferase subunit c | SAMN04488524_2897 | Not Available | Positive | 3464094 - 3464384 | 11049.6 |
| putative abc transport system atp-binding protein | SAMN04488524_2898 | Not Available | Positive | 3464436 - 3465242 | 29199.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

