Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| predicted dehydrogenase | SAMN04488524_2829 | Not Available | Negative | 3378762 - 3379922 | 42610.7 |
| choline dehydrogenase | SAMN04488524_2830 | Not Available | Negative | 3379922 - 3381625 | 63563.1 |
| gluconate 2-dehydrogenase subunit 3 | SAMN04488524_2831 | Not Available | Negative | 3381645 - 3382334 | 24850.5 |
| nucleoside-diphosphate-sugar epimerase | SAMN04488524_2832 | Not Available | Positive | 3382569 - 3383513 | 35247.9 |
| dna-binding regulatory protein, yebc/pmpr family | SAMN04488524_2833 | Not Available | Positive | 3383603 - 3384331 | 27204.0 |
| alpha/beta hydrolase family protein | SAMN04488524_2834 | Not Available | Negative | 3384344 - 3385129 | 29918.1 |
| hypothetical protein | SAMN04488524_2835 | Not Available | Negative | 3385171 - 3386040 | 31773.7 |
| catechol 2,3-dioxygenase | SAMN04488524_2836 | Not Available | Positive | 3386454 - 3386885 | 16313.4 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488524_2837 | Not Available | Positive | 3387062 - 3387631 | 21979.5 |
| fecr family protein | SAMN04488524_2838 | Not Available | Positive | 3387684 - 3388781 | 39946.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

