Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| polyisoprenoid-binding protein ycei | SAMN04488524_2799 | Not Available | Negative | 3346724 - 3347317 | 21218.8 |
| glycine dehydrogenase | SAMN04488524_2800 | Not Available | Negative | 3347407 - 3350289 | 105051.0 |
| hypothetical protein | SAMN04488524_2801 | Not Available | Negative | 3350381 - 3350953 | 21715.4 |
| pyridoxine 5'-phosphate synthase | SAMN04488524_2802 | Not Available | Negative | 3350964 - 3351683 | 26586.8 |
| mechanosensitive ion channel | SAMN04488524_2803 | Not Available | Positive | 3351713 - 3353278 | 58412.1 |
| outer membrane receptor proteins, mostly fe transport | SAMN04488524_2804 | Not Available | Positive | 3353320 - 3355335 | 74238.0 |
| adenosylhomocysteinase | SAMN04488524_2805 | Not Available | Negative | 3355405 - 3356721 | 48321.0 |
| two component transcriptional regulator, winged helix family | SAMN04488524_2806 | Not Available | Positive | 3356865 - 3357572 | 26629.8 |
| signal transduction histidine kinase | SAMN04488524_2807 | Not Available | Positive | 3357556 - 3358935 | 52119.1 |
| hypothetical protein | SAMN04488524_2808 | Not Available | Positive | 3359050 - 3359532 | 18132.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

