Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulator, tetr family | SAMN04488524_2749 | Not Available | Negative | 3290048 - 3290653 | 23330.3 |
| transcriptional regulator, tetr family | SAMN04488524_2750 | Not Available | Negative | 3290771 - 3291379 | 23163.2 |
| udp-n-acetylmuramate dehydrogenase | SAMN04488524_2751 | Not Available | Positive | 3291534 - 3292556 | 37207.7 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488524_2752 | Not Available | Positive | 3292722 - 3293252 | 20326.5 |
| sugar lactone lactonase yvre | SAMN04488524_2753 | Not Available | Negative | 3293256 - 3294158 | 33220.5 |
| heparin/heparan-sulfate lyase | SAMN04488524_2754 | Not Available | Positive | 3294245 - 3296917 | 100368.0 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488524_2755 | Not Available | Positive | 3297251 - 3300373 | 114986.0 |
| starch-binding associating with outer membrane | SAMN04488524_2756 | Not Available | Positive | 3300386 - 3302227 | 69048.1 |
| hypothetical protein | SAMN04488524_2757 | Not Available | Positive | 3302251 - 3302655 | 14996.2 |
| protein of unknown function | SAMN04488524_2758 | Not Available | Positive | 3302666 - 3303658 | 35777.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

