Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-binding transcriptional regulator, marr family | SAMN04488524_2729 | Not Available | Positive | 3261209 - 3261682 | 17654.5 |
| 3-hydroxyacyl-coa dehydrogenase | SAMN04488524_2730 | Not Available | Positive | 3261730 - 3264093 | 87244.3 |
| acetyl-coa acyltransferase | SAMN04488524_2731 | Not Available | Positive | 3264113 - 3265291 | 42031.8 |
| acyl-coa dehydrogenase | SAMN04488524_2732 | Not Available | Positive | 3265330 - 3267120 | 65580.0 |
| fkbp-type peptidyl-prolyl cis-trans isomerase fkpa | SAMN04488524_2733 | Not Available | Positive | 3267244 - 3267750 | 18468.4 |
| fkbp-type peptidyl-prolyl cis-trans isomerase | SAMN04488524_2734 | Not Available | Positive | 3267743 - 3268642 | 32686.2 |
| deoxyribodipyrimidine photo-lyase | SAMN04488524_2735 | Not Available | Negative | 3268645 - 3269949 | 51162.0 |
| hypothetical protein | SAMN04488524_2736 | Not Available | Negative | 3269970 - 3270878 | 33355.8 |
| deoxyribodipyrimidine photo-lyase | SAMN04488524_2737 | Not Available | Positive | 3271041 - 3272333 | 48867.6 |
| b12 binding domain-containing protein | SAMN04488524_2738 | Not Available | Positive | 3272422 - 3273309 | 34009.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

