Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gaf domain-containing protein | SAMN04488524_2719 | Not Available | Positive | 3246165 - 3246695 | 19699.6 |
| badf-type atpase | SAMN04488524_2720 | Not Available | Negative | 3246712 - 3247569 | 31961.0 |
| outer membrane protein tolc | SAMN04488524_2721 | Not Available | Negative | 3247588 - 3248913 | 48818.3 |
| multidrug efflux pump | SAMN04488524_2722 | Not Available | Negative | 3248891 - 3252004 | 114171.0 |
| membrane fusion protein, multidrug efflux system | SAMN04488524_2723 | Not Available | Negative | 3252001 - 3253089 | 38827.4 |
| predicted metalloprotease, contains c-terminal pdz domain | SAMN04488524_2724 | Not Available | Positive | 3253234 - 3255021 | 66235.1 |
| hypothetical protein | SAMN04488524_2725 | Not Available | Negative | 3255479 - 3255961 | 17113.6 |
| long-chain acyl-coa synthetase | SAMN04488524_2726 | Not Available | Positive | 3256175 - 3257947 | 66586.5 |
| gamma-glutamyltranspeptidase / glutathione hydrolase | SAMN04488524_2727 | Not Available | Positive | 3257967 - 3259640 | 59762.7 |
| ompa-ompf porin, oop family | SAMN04488524_2728 | Not Available | Positive | 3259765 - 3261075 | 46472.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

