Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gtp-binding protein era | SAMN04488524_2689 | Not Available | Positive | 3197835 - 3198713 | 33428.2 |
| thioredoxin-like | SAMN04488524_2690 | Not Available | Positive | 3198747 - 3199253 | 18944.1 |
| gtp-binding protein | SAMN04488524_2691 | Not Available | Positive | 3199355 - 3200656 | 49107.3 |
| carboxyl-terminal processing protease | SAMN04488524_2692 | Not Available | Negative | 3200659 - 3202239 | 58834.6 |
| n-acetylmuramic acid 6-phosphate etherase | SAMN04488524_2693 | Not Available | Positive | 3202435 - 3203241 | 28908.9 |
| hypothetical protein | SAMN04488524_2694 | Not Available | Positive | 3203253 - 3203822 | 22799.7 |
| hypothetical protein | SAMN04488524_2695 | Not Available | Positive | 3203874 - 3204623 | 27045.7 |
| l-histidine carboxy-lyase (histamine-forming) | SAMN04488524_2696 | Not Available | Negative | 3204679 - 3205809 | 42360.9 |
| transcriptional regulator, asnc family | SAMN04488524_2697 | Not Available | Positive | 3205955 - 3206422 | 17467.2 |
| uncharacterized conserved protein yndb, ahsa1/start domain | SAMN04488524_2698 | Not Available | Negative | 3206784 - 3207707 | 35543.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

