Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aspartate kinase | SAMN04488524_2679 | Not Available | Positive | 3185475 - 3187922 | 89925.0 |
| homoserine kinase | SAMN04488524_2680 | Not Available | Positive | 3187926 - 3188864 | 33263.6 |
| threonine synthase | SAMN04488524_2681 | Not Available | Positive | 3188866 - 3190176 | 48872.6 |
| heat shock protein hslj | SAMN04488524_2682 | Not Available | Negative | 3190163 - 3190597 | 15579.1 |
| 5,10-methylenetetrahydrofolate reductase (nad(p)) | SAMN04488524_2683 | Not Available | Negative | 3190649 - 3191605 | 35929.4 |
| methionine synthase (b12-dependent) | SAMN04488524_2684 | Not Available | Negative | 3191644 - 3195303 | 135261.0 |
| alpha-l-fucosidase | SAMN04488524_2685 | Not Available | Negative | 3195647 - 3197011 | 52409.4 |
| hypothetical protein | SAMN04488524_2686 | Not Available | Positive | 3197197 - 3197358 | 5679.99 |
| Trna-glu | Not Available | Not Available | Positive | 3197533 - 3197607 | Not Available |
| Trna-met | Not Available | Not Available | Positive | 3197648 - 3197723 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

