Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| large subunit ribosomal protein l32 | SAMN04488524_2669 | Not Available | Negative | 3178723 - 3178914 | 7110.46 |
| uncharacterized metal-binding protein yced, duf177 family | SAMN04488524_2670 | Not Available | Negative | 3178933 - 3179475 | 20670.8 |
| 4-hydroxythreonine-4-phosphate dehydrogenase | SAMN04488524_2671 | Not Available | Negative | 3179538 - 3180617 | 39230.1 |
| 16s rrna (adenine1518-n6/adenine1519-n6)-dimethyltransferase | SAMN04488524_2672 | Not Available | Positive | 3180715 - 3181497 | 29571.1 |
| d-3-phosphoglycerate dehydrogenase | SAMN04488524_2673 | Not Available | Positive | 3181510 - 3182439 | 34477.7 |
| transcription elongation factor grea | SAMN04488524_2674 | Not Available | Positive | 3182556 - 3183029 | 17080.5 |
| histidine triad (hit) family protein | SAMN04488524_2675 | Not Available | Positive | 3183040 - 3183441 | 14637.0 |
| ntp pyrophosphatase, house-cleaning of non-canonical ntps | SAMN04488524_2676 | Not Available | Negative | 3183497 - 3183823 | 12317.7 |
| d-tyrosyl-trna(tyr) deacylase | SAMN04488524_2677 | Not Available | Negative | 3183823 - 3184275 | 16252.8 |
| ribosome biogenesis gtpase | SAMN04488524_2678 | Not Available | Negative | 3184278 - 3185261 | 36894.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

