Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein of unknown function | SAMN04488524_0228 | Not Available | Negative | 337992 - 338813 | 30446.0 |
| tonb-dependent receptor plug domain | SAMN04488524_0229 | Not Available | Negative | 338831 - 341203 | 88462.0 |
| histidine kinase | SAMN04488524_0230 | Not Available | Positive | 341454 - 342461 | 38875.5 |
| two component transcriptional regulator, lyttr family | SAMN04488524_0231 | Not Available | Positive | 342458 - 343180 | 27860.6 |
| hypothetical protein | SAMN04488524_0232 | Not Available | Negative | 343182 - 346346 | 119438.0 |
| hexosaminidase | SAMN04488524_0233 | Not Available | Negative | 346359 - 348239 | 70473.7 |
| hypothetical protein | SAMN04488524_0234 | Not Available | Negative | 348252 - 349298 | 37214.5 |
| hypothetical protein | SAMN04488524_0235 | Not Available | Negative | 349373 - 350425 | 38115.9 |
| starch-binding associating with outer membrane | SAMN04488524_0236 | Not Available | Negative | 350443 - 351999 | 57238.8 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488524_0237 | Not Available | Negative | 352012 - 355452 | 125674.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

