Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488524_2526 | Not Available | Negative | 3008011 - 3008589 | 22424.0 |
| hypothetical protein | SAMN04488524_2527 | Not Available | Negative | 3008672 - 3008866 | 7498.24 |
| phage derived protein gp49-like | SAMN04488524_2528 | Not Available | Positive | 3008900 - 3009238 | 13573.5 |
| helix-turn-helix | SAMN04488524_2529 | Not Available | Positive | 3009225 - 3009530 | 11333.8 |
| conserved hypothetical protein (putative transposase or invertase) | SAMN04488524_2530 | Not Available | Positive | 3009635 - 3009859 | 8507.53 |
| helix-turn-helix | SAMN04488524_2531 | Not Available | Positive | 3010160 - 3010432 | 10414.8 |
| hypothetical protein | SAMN04488524_2532 | Not Available | Positive | 3010583 - 3011467 | 31839.7 |
| hypothetical protein | SAMN04488524_2533 | Not Available | Positive | 3011484 - 3012563 | 39727.0 |
| hypothetical protein | SAMN04488524_2534 | Not Available | Positive | 3012586 - 3016035 | 129386.0 |
| rhs repeat-associated core domain-containing protein | SAMN04488524_2535 | Not Available | Positive | 3016047 - 3019448 | 124126.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

