Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phytoene desaturase | SAMN04488524_0217 | Not Available | Positive | 329259 - 330752 | 56216.1 |
| phytoene/squalene synthetase | SAMN04488524_0218 | Not Available | Positive | 330736 - 331572 | 32677.5 |
| hypothetical protein | SAMN04488524_0219 | Not Available | Positive | 331569 - 332018 | 17099.0 |
| beta-carotene 3-hydroxylase | SAMN04488524_0220 | Not Available | Positive | 332015 - 332473 | 18272.4 |
| lycopene cyclase domain-containing protein | SAMN04488524_0221 | Not Available | Positive | 332470 - 333165 | 26903.5 |
| heme oxygenase | SAMN04488524_0222 | Not Available | Negative | 333206 - 333766 | 20385.4 |
| hypothetical protein | SAMN04488524_0223 | Not Available | Negative | 333926 - 334234 | 11798.3 |
| transcriptional regulator, arac family | SAMN04488524_0225 | Not Available | Negative | 335259 - 336233 | 37376.8 |
| hypothetical protein | SAMN04488524_0226 | Not Available | Positive | 336342 - 336839 | 19249.9 |
| 2-polyprenyl-6-methoxyphenol hydroxylase | SAMN04488524_0227 | Not Available | Positive | 336832 - 338046 | 45885.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

