Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488524_2506 | Not Available | Positive | 2977751 - 2978332 | 22097.6 |
| fecr family protein | SAMN04488524_2507 | Not Available | Positive | 2978409 - 2979416 | 37592.0 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488524_2508 | Not Available | Positive | 2979560 - 2982877 | 122401.0 |
| susd family protein | SAMN04488524_2509 | Not Available | Positive | 2982895 - 2984331 | 53075.3 |
| thiol-disulfide isomerase or thioredoxin | SAMN04488524_2510 | Not Available | Positive | 2984343 - 2986268 | 71918.2 |
| signal transduction histidine kinase | SAMN04488524_2511 | Not Available | Positive | 2986333 - 2990454 | 154756.0 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488524_2512 | Not Available | Positive | 2990537 - 2993635 | 113404.0 |
| starch-binding associating with outer membrane | SAMN04488524_2513 | Not Available | Positive | 2993645 - 2995129 | 54806.6 |
| predicted glycosyl hydrolase, gh43/duf377 family | SAMN04488524_2514 | Not Available | Positive | 2995167 - 2996225 | 39512.8 |
| mfs transporter, yqge family, putative transporter | SAMN04488524_2515 | Not Available | Positive | 2996215 - 2997510 | 47846.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

