Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein of unknown function | SAMN04488524_2496 | Not Available | Positive | 2967390 - 2967965 | 21268.3 |
| glucose-1-phosphate thymidylyltransferase | SAMN04488524_2497 | Not Available | Positive | 2968053 - 2968913 | 31388.1 |
| mfs transporter, fhs family, l-fucose permease | SAMN04488524_2498 | Not Available | Positive | 2969163 - 2970404 | 45015.6 |
| l-rhamnose mutarotase | SAMN04488524_2499 | Not Available | Positive | 2970408 - 2970746 | 13257.0 |
| altronate hydrolase | SAMN04488524_2500 | Not Available | Positive | 2970748 - 2972406 | 59743.3 |
| nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase family | SAMN04488524_2501 | Not Available | Positive | 2972417 - 2973181 | 26583.9 |
| 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) | SAMN04488524_2502 | Not Available | Positive | 2973269 - 2974126 | 31318.1 |
| l-fuconolactonase | SAMN04488524_2503 | Not Available | Positive | 2974113 - 2974943 | 31551.6 |
| 3-oxoacyl-[acyl-carrier protein] reductase | SAMN04488524_2504 | Not Available | Positive | 2974959 - 2975750 | 27635.0 |
| xaa-pro aminopeptidase | SAMN04488524_2505 | Not Available | Negative | 2975848 - 2977623 | 65755.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

