Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyl transferase family 2 | SAMN04488524_2476 | Not Available | Negative | 2946580 - 2947482 | 34533.2 |
| methyltransferase domain-containing protein | SAMN04488524_2477 | Not Available | Negative | 2947485 - 2948252 | 29631.9 |
| methyltransferase, fkbm family | SAMN04488524_2478 | Not Available | Positive | 2948383 - 2949069 | 26670.1 |
| membrane protein involved in the export of o-antigen and teichoic acid | SAMN04488524_2479 | Not Available | Negative | 2949066 - 2950382 | 49478.9 |
| putative hydrolase of the had superfamily | SAMN04488524_2480 | Not Available | Negative | 2950401 - 2951090 | 26928.9 |
| uracil phosphoribosyltransferase | SAMN04488524_2481 | Not Available | Negative | 2951117 - 2951791 | 25112.0 |
| hypothetical protein | SAMN04488524_2482 | Not Available | Negative | 2951751 - 2952770 | 38708.1 |
| excinuclease abc subunit b | SAMN04488524_2483 | Not Available | Positive | 2952843 - 2954882 | 77827.4 |
| conserved hypothetical protein | SAMN04488524_2484 | Not Available | Positive | 2954895 - 2955089 | 7048.63 |
| protein of unknown function | SAMN04488524_2485 | Not Available | Positive | 2955130 - 2955387 | 9908.33 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

