Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fecr family protein | SAMN04488524_2394 | Not Available | Positive | 2846327 - 2847322 | 37469.8 |
| tonb-dependent receptor plug domain | SAMN04488524_2395 | Not Available | Positive | 2847303 - 2849858 | 97432.6 |
| hypothetical protein | SAMN04488524_2396 | Not Available | Positive | 2849867 - 2850706 | 31926.1 |
| hypothetical protein | SAMN04488524_2397 | Not Available | Positive | 2850765 - 2852549 | 67235.0 |
| hypothetical protein | SAMN04488524_2398 | Not Available | Positive | 2852580 - 2854373 | 67909.5 |
| dipeptidyl-peptidase-4 | SAMN04488524_2399 | Not Available | Negative | 2854399 - 2856519 | 80604.0 |
| branched-chain amino acid aminotransferase | SAMN04488524_2400 | Not Available | Negative | 2856625 - 2857689 | 39134.6 |
| d-3-phosphoglycerate dehydrogenase | SAMN04488524_2401 | Not Available | Negative | 2857740 - 2859038 | 49394.9 |
| nucleoside-diphosphate-sugar epimerase | SAMN04488524_2402 | Not Available | Negative | 2859194 - 2860219 | 37286.8 |
| arginase family enzyme | SAMN04488524_2403 | Not Available | Positive | 2860232 - 2861413 | 44504.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

