Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uncharacterized membrane protein spoiim, required for sporulation | SAMN04488524_2374 | Not Available | Positive | 2821510 - 2822460 | 35867.0 |
| hypothetical protein | SAMN04488524_2375 | Not Available | Positive | 2822463 - 2823341 | 33380.4 |
| protein of unknown function | SAMN04488524_2376 | Not Available | Positive | 2823343 - 2824068 | 27954.6 |
| hypothetical protein | SAMN04488524_2377 | Not Available | Positive | 2824065 - 2825246 | 44907.5 |
| moxr-like atpase | SAMN04488524_2378 | Not Available | Positive | 2825250 - 2826227 | 36185.0 |
| uncharacterized conserved protein, duf58 family, contains vwf domain | SAMN04488524_2379 | Not Available | Positive | 2826238 - 2827584 | 52254.5 |
| l-serine dehydratase | SAMN04488524_2380 | Not Available | Negative | 2827589 - 2829016 | 51199.4 |
| putative mg2+ transporter-c (mgtc) family protein | SAMN04488524_2381 | Not Available | Negative | 2829073 - 2829729 | 24214.9 |
| type ix secretion system membrane protein, porp/sprf family | SAMN04488524_2382 | Not Available | Negative | 2829766 - 2830794 | 37418.1 |
| pkd repeat-containing protein | SAMN04488524_2383 | Not Available | Negative | 2830797 - 2836814 | 212676.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

