Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase family | SAMN04488524_2364 | Not Available | Negative | 2812685 - 2813560 | 31263.7 |
| enoyl-coa hydratase/carnithine racemase | SAMN04488524_2365 | Not Available | Negative | 2813565 - 2814326 | 28028.1 |
| tonb-dependent outer membrane receptor, susc/raga subfamily, signature region | SAMN04488524_2366 | Not Available | Negative | 2814333 - 2817041 | 99558.8 |
| dctp deaminase | SAMN04488524_2367 | Not Available | Negative | 2817100 - 2817636 | 20041.2 |
| phosphopantetheinyl transferase | SAMN04488524_2368 | Not Available | Positive | 2817766 - 2818425 | 25356.9 |
| lipoyl(octanoyl) transferase | SAMN04488524_2369 | Not Available | Positive | 2818435 - 2819130 | 26421.5 |
| hypothetical protein | SAMN04488524_2370 | Not Available | Positive | 2819217 - 2819702 | 17365.5 |
| protein of unknown function | SAMN04488524_2371 | Not Available | Positive | 2819706 - 2820044 | 12624.5 |
| lysophospholipase l1 | SAMN04488524_2372 | Not Available | Positive | 2820053 - 2820673 | 22318.7 |
| uncharacterized membrane protein yckc, rdd family | SAMN04488524_2373 | Not Available | Negative | 2820674 - 2821417 | 27657.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

