Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| outer membrane receptor proteins, mostly fe transport | SAMN04488524_2344 | Not Available | Negative | 2786076 - 2788829 | 101259.0 |
| protein of unknown function | SAMN04488524_2345 | Not Available | Positive | 2788981 - 2790801 | 68432.2 |
| helicase | SAMN04488524_2346 | Not Available | Positive | 2790821 - 2793172 | 88269.3 |
| diaminopimelate epimerase | SAMN04488524_2347 | Not Available | Negative | 2793132 - 2793944 | 30048.3 |
| serine protease, s1-c subfamily, contains c-terminal pdz domain | SAMN04488524_2348 | Not Available | Positive | 2794095 - 2795648 | 54347.7 |
| succinate dehydrogenase / fumarate reductase cytochrome b subunit | SAMN04488524_2349 | Not Available | Positive | 2795879 - 2796559 | 25034.4 |
| succinate dehydrogenase subunit a | SAMN04488524_2350 | Not Available | Positive | 2796576 - 2798555 | 73277.0 |
| succinate dehydrogenase / fumarate reductase iron-sulfur subunit | SAMN04488524_2351 | Not Available | Positive | 2798565 - 2799335 | 28034.6 |
| tonb family c-terminal domain-containing protein | SAMN04488524_2352 | Not Available | Negative | 2799435 - 2801489 | 75793.8 |
| predicted transcriptional regulator | SAMN04488524_2353 | Not Available | Negative | 2801486 - 2801863 | 14821.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

